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Ka Ks ratio
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11	Downloaded from genome.cshlp.org on December 2, [removed]Published by Cold Spring Harbor Laboratory Press Localized hypermutation and associated gene losses in legume chloroplast genomes Alan M. Magee, Sue Aspinall, Danny Add to Reading List Source URL: www.utm.utoronto.ca Language: English - Date: 2012-05-04 10:56:43 Ka/Ks ratio Noncoding DNA Ridge Lathyrus Genome Horizontal gene transfer Mitochondrial DNA Subfunctionalization Mutation Biology Genetics Philosophy of biology
12	Adaptive Evolution of Digestive RNASE1 Genes in Leaf-Eating Monkeys Revisited: New Insights from Ten Additional Colobines Li Yu,* ,1 Xiao-yan Wang,1 Wei Jin,1 Peng-tao Luan,1 Nelson Ting,2 and Ya-ping Zhang ,3 1 Add to Reading List Source URL: molecular-anthro.uoregon.edu Language: English - Date: 2012-10-03 01:34:44 Gene expression Molecular biology DNA Noncoding DNA Ka/Ks ratio Evolution by Gene Duplication Gene Codon usage bias Synonymous substitution Biology Genetics Molecular evolution
13	ARTICLE doi:[removed]nature11622 Analyses of pig genomes provide insight into porcine demography and evolution Add to Reading List Source URL: www.nature.com Language: English - Date: 2012-11-14 13:00:45 Genomics Molecular biology Genetic mapping Pig Domestic pig Ridge Ka/Ks ratio Human genome Genome project Biology Genetics Bioinformatics
14	Molecular Evolution of the Toll-Like Receptor Multigene Family in Birds Miguel Alcaide,1 and Scott V. Edwards1 1 Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Muscat Add to Reading List Source URL: www.oeb.harvard.edu Language: English* - Date: 2011-06-07 21:09:31 Molecular evolution Population genetics DNA Toll-like receptor Nonsynonymous substitution TLR 1 Ka/Ks ratio TLR 2 TLR 3 Biology Molecular biology Genetics
15	letters to nature .............................................................. Detecting selection using a single genome sequence of M. tuberculosis and P. falciparum Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2004-07-01 14:48:46 Genetics Protein biosynthesis Molecular evolution Genetic code Codon usage bias Ka/Ks ratio Synonymous substitution Gene Mutation Biology Molecular biology Gene expression
16	Downloaded from genome.cshlp.org on October 11, [removed]Published by Cold Spring Harbor Laboratory Press Young proteins experience more variable selection pressures than old proteins Anchal Vishnoi, Sergey Kryazhimskiy, Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2010-12-20 09:24:11 Gene Population genetics Evolution Human genome Natural selection Adaptive evolution in the human genome Ridge Biology Genetics Ka/Ks ratio
17	LETTERS Estimating Selection Pressures from Limited Comparative Data Joshua B. Plotkin,* Jonathan Dushoff, Michael M. Desai,à and Hunter B. Fraser§ Department of Biology, University of Pennsylvania; Department of Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English* - Date: 2006-07-13 13:43:12 Gene expression Molecular evolution Genetics Protein biosynthesis Ka/Ks ratio Codon usage bias Genetic code Gene Nonsynonymous substitution Biology Biochemistry Molecular biology
18	Proc. R. Soc. B[removed], 2455–2464 doi:[removed]rspb[removed]Published online 22 July 2008 Directionality in the evolution of influenza A haemagglutinin Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2008-10-07 10:39:54 Gene expression Bioinformatics Computational phylogenetics Ka/Ks ratio Nonsynonymous substitution Synonymous substitution Codon usage bias Substitution model Genetic code Biology Molecular biology Molecular evolution
19	Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces paradoxus Anchal Vishnoi,1 Praveen Sethupathy,2 Daniel Simola,1 Joshua B. Plotkin,,1 and Sr Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English* - Date: 2011-09-27 13:41:34 Genome-wide association study Ka/Ks ratio Human genome Mutation Population genetics Gene Neutral theory of molecular evolution Adaptive evolution in the human genome PupaSuite Biology Genetics Single-nucleotide polymorphism
20	brief communications arising Evolutionary genomics Codon bias and selection on single genomes Arising from: J. B. Plotkin, J. Dushoff & H. B. Fraser Nature 428, 942–[removed]) Add to Reading List Source URL: mathbio.sas.upenn.edu Language: English - Date: 2005-01-19 15:57:40 Gene expression Protein biosynthesis Genetics Mutation Codon usage bias Codon Adaptation Index Genetic code Ka/Ks ratio Synonymous substitution Biology Biochemistry Molecular biology

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